The discrimination index was highest for antimicrobial resistance analysis (D = 0.472) followed by MLST (D = 0.25), and PFGE (D = 0.155). The data demonstrates that there are at least two sequence types of S. Senftenberg circulating in both animal and human hosts. Of interest, our sequenced strain (3-70-11), identified as an ST 185, falls in the same cluster PRT062607 in vivo as isolates implicated in human disease and those recovered from animals. Also of interest, the majority of isolates identified as ST 14, which were found in both human and animal hosts, tested (diagnostic or healthy) were not exclusive to a single host. It was evident that the MLST sequence types did not

provide as good a method of differentiation as that of PFGE when examined

using Simpson’s Index of Diversity (0.155 for PFGE versus 0.25 for MLST). The PFGE profiles, which were relatively unique among the strains tested, resulted in 93 profiles for the 98 strains tested. PFGE revealed some clustering but the majority of PFGE profiles appeared to be unique to the individual strains. Discussion This study examined Dasatinib purchase S. Senftenberg isolates from humans and animals to assess the genetic relatedness of S. Senftenberg from various hosts. In total, 98 strains of S. Senftenberg from various locations in the United States associated with humans and animal hosts were assessed using PFGE, MLST and antimicrobial susceptibility analysis (NARMS). Pulsed field gel (PFGE) analysis of the isolates found that most S. Senftenberg isolates examined had profiles that appeared to be unique to the individual strains; among the 98 strains tested 93 unique profiles were

identified. Cluster analysis identified four primary clusters ADP ribosylation factor at approximately 58% buy Ulixertinib similarity; with most clusters composed of ST 14 and a single cluster consisting of ST 185. It was evident that PFGE provided greater differentiation than MLST alone which would have created two clusters only. This observation was supported by the diversity indices which found that PFGE resulted in the greatest rate of diversity over MLST and antimicrobial susceptibility testing. Similar studies by our lab investigating S. Typhimurium found that PFGE provided greater differentiation for the strains than MLST alone [5]. It has been suggested that housekeeping genes can be too conservative and greater differentiation may be possible by expansion of the panel to include virulence genes where inherent variation may be greater [6]. In a recent study, Liu et al [24] used two virulence genes (sseL and fimH) and a clustered regularly interspaced short palindromic repeat loci (CRISPR) as an alternative MLST analysis for subtyping the major serovars of Salmonella enterica sub species enterica. The MLST scheme using only the two virulence genes corresponded well with the serotypes but failed to discriminate between outbreak strains.